First ensure the TextFx plugin has been installed in your version of notepad++.
Some example text:
I then copy and paste that block of text to ensure there are duplicate lines:
Removing the duplicates involves THREE steps:
1. If you have not already done so, ensure the appropriate TextFX plugin is checked.
Select TextFX > TextFX Tools > Sort outputs only UNIQUE at column lines:
2. Select ALL of your text (select Control + A)
3. Select TextFX > TextFX Tools > Sort lines case sensitive (at column):
See that the duplicate lines have been identified and removed: